TY  - ADVS
AU  - Shamir,Ron
TI  - Computational methods in analysis of gene regulation and protein interactions
T2  - Protein homeostasis : folding proteins and maintaining the protein-protein interaction networks,
PY  - 2012///
CY  - London
PB  - Henry Stewart Talks
KW  - Biological models.
KW  - Computational biology.
KW  - Protein-protein interactions
KW  - Data processing
KW  - Proteomics
KW  - Algorithms
KW  - Computational Biology
KW  - methods
KW  - Gene Regulatory Networks
KW  - Protein Interaction Mapping
KW  - Systems Biology
N1  - Animated audio-visual presentation with synchronized narration; Title from title frames; Contents: Finding regulatory motifs -- Finding motifs using target sets of promoters -- Problem definition -- The Amadeus motif finding algorithm -- Architecture, benchmark results and global analysis -- Finding transcriptional programs and their regulatory motifs -- Problem definition -- The Allegro software for recovering transcriptional program -- Results on yeast osmotic shock expression profiles -- Recovering microRNA binding motifs from 3' UTRs using stem cell expression profiles -- Discovering a novel motif pair in C. elegans -- Utilizing network information -- Using expression and protein interaction data -- Problem definition and the Matisse algorithm -- Demonstration of Matisse on yeast osmotic shock data -- Comparison of Matisse to other algorithms -- Demonstration of Matisse on human stem cell data -- The pluripotency network -- Using expression and protein interaction data with interaction confidence -- The Cezanne algorithm -- DNA damage response in yeast; Access restricted to subscribers
UR  - https://hstalks.com/bs/2219/
UR  - https://hstalks.com/bs/p/641/
ER  -